Bowtie2 설치

이미지 출처: http://bowtie-bio.sourceforge.net/

이미지 출처: http://bowtie-bio.sourceforge.net/

1 wget http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.4/bowtie2-2.2.4-source.zip
2 unzip bowtie2-2.2.4-source.zip
3 cd bowtie2-2.2.4/
4 make
5 bowtie2-build example/reference/lambda_virus.fa lambda_virus
6 bowtie2 -x lambda_virus -U example/reads/reads_1.fq -S eg1.sam
7 samtools view -bS eg1.sam
8 sudo cp bowtie2* /usr/local/bin

line 1: Downloading
line 4: Compiling
line 5: Building an example reference genome
line 6: Aligning example reads
line 7: Verifying the results using Samtools
(optional) line 8: Copying the Bowtie2 executable files to an existing directory in your PATH

Reference: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml

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